ClinVar Miner

Variants from Institute of Human Genetics, University Hospital of Duesseldorf with conflicting interpretations

Location: Germany  Primary collection method: not provided
Minimum review status of the submission from Institute of Human Genetics, University Hospital of Duesseldorf: Collection method of the submission from Institute of Human Genetics, University Hospital of Duesseldorf:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic) 		Variants with a confidence conflict
(e.g. benign vs likely benign) 		Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects) 		Variants with a clinically significant conflict
(e.g. benign vs pathogenic) 		Variants with any conflict
218 45 1 41 12 0 14 63

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
Institute of Human Genetics, University Hospital of Duesseldorf pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 1 28 6 2 0
likely pathogenic 13 0 3 0 0
uncertain significance 2 2 0 10 5

Submitter to submitter summary #

Total submitters: 74
Download table as spreadsheet
Submitter Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic) 		Variants with a confidence conflict
(e.g. benign vs likely benign) 		Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects) 		Variants with a clinically significant conflict
(e.g. benign vs pathogenic) 		Variants with any conflict
Labcorp Genetics (formerly Invitae), Labcorp 0 35 0 4 7 0 2 13
OMIM 0 30 1 8 0 0 2 11
Women's Health and Genetics/Laboratory Corporation of America, LabCorp 0 21 0 8 1 0 0 9
Fulgent Genetics, Fulgent Genetics 0 18 0 5 1 0 1 7
Genomics England Pilot Project, Genomics England 0 2 0 5 0 0 0 5
LDLR-LOVD, British Heart Foundation 0 1 0 5 0 0 0 5
MGZ Medical Genetics Center 0 4 0 5 0 0 0 5
Robarts Research Institute, Western University 0 0 0 5 0 0 0 5
Illumina Laboratory Services, Illumina 0 8 0 1 2 0 1 4
Institute for Integrative and Experimental Genomics, University of Luebeck 0 0 0 2 0 0 2 4
SIB Swiss Institute of Bioinformatics 0 1 0 3 0 0 1 4
Variantyx, Inc. 0 7 0 4 0 0 0 4
Centre de Génétique Moléculaire et Chromosomique, Unité de génétique de l'Obésité et des Dyslipidémies, APHP, GH Hôpitaux Universitaires Pitié-Salpêtrière / Charles-Foix 0 1 0 3 0 0 0 3
Counsyl 0 2 0 3 0 0 0 3
Genome-Nilou Lab 0 5 0 0 1 0 2 3
Mendelics 0 10 0 2 0 0 1 3
Molecular Genetics Laboratory, Centre for Cardiovascular Surgery and Transplantation 0 0 0 3 0 0 0 3
Myriad Genetics, Inc. 0 6 0 1 2 0 0 3
Natera, Inc. 0 10 0 2 1 0 0 3
3billion 0 14 0 2 0 0 0 2
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories 0 3 0 1 1 0 0 2
Department of Pathology and Laboratory Medicine, Sinai Health System 0 6 0 1 0 0 1 2
Genomic Medicine Center of Excellence, King Faisal Specialist Hospital and Research Centre 0 0 0 2 0 0 0 2
Human Genome Sequencing Center Clinical Lab, Baylor College of Medicine 0 3 0 2 0 0 0 2
Inherited Neuropathy Consortium Ii, University Of Miami 0 0 0 0 0 0 2 2
Institute of Human Genetics, Heidelberg University 0 1 0 2 0 0 0 2
Johns Hopkins Genomics, Johns Hopkins University 0 2 0 2 0 0 0 2
Juno Genomics, Hangzhou Juno Genomics, Inc 0 3 0 2 0 0 0 2
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine 0 2 0 2 0 0 0 2
Laboratory of Medical Genetics, National & Kapodistrian University of Athens 0 6 0 2 0 0 0 2
Neuberg Centre For Genomic Medicine, NCGM 0 6 0 1 0 0 1 2
Revvity Omics, Revvity 0 18 0 2 0 0 0 2
Solve-RD Consortium 0 0 0 2 0 0 0 2
Baylor Genetics 0 13 0 1 0 0 0 1
Biochemical Molecular Genetic Laboratory, King Abdulaziz Medical City 0 2 0 1 0 0 0 1
Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard 0 4 0 1 0 0 0 1
Brunham Lab, Centre for Heart and Lung Innovation, University of British Columbia 0 3 0 1 0 0 0 1
Cardiovascular Research Group, Instituto Nacional de Saude Doutor Ricardo Jorge 0 2 0 1 0 0 0 1
CeGaT Center for Human Genetics Tuebingen 0 1 0 0 1 0 0 1
Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago 0 2 0 1 0 0 0 1
Centre de Biologie Pathologie Génétique, Centre Hospitalier Universitaire de Lille 0 2 0 1 0 0 0 1
Centre for Mendelian Genomics, University Medical Centre Ljubljana 0 4 0 1 0 0 0 1
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center 0 1 0 0 1 0 0 1
Clinical Genetics Laboratory, University Hospital Schleswig-Holstein 0 4 0 1 0 0 0 1
Clinical Genomics Laboratory, Stanford Medicine 0 0 0 1 0 0 0 1
Color Diagnostics, LLC DBA Color Health 0 5 0 0 1 0 0 1
Daryl Scott Lab, Baylor College of Medicine 0 1 0 1 0 0 0 1
Department Of Human Genetics, Institute Of Clinical And Translational Research, Biomedical Research Center, Slovak Academy Of Sciences 0 0 0 1 0 0 0 1
Department of Human Genetics, Laborarztpraxis Dres. Walther, Weindel und Kollegen 0 1 0 1 0 0 0 1
Department of Traditional Chinese Medicine, Fujian Provincial Hospital 0 0 0 1 0 0 0 1
Dr.Nikuei Genetic Center 0 0 0 0 1 0 0 1
First Genomix Gene Laboratory, Genetic Diagnostics Department 0 9 0 0 0 0 1 1
Genetic Services Laboratory, University of Chicago 0 4 0 1 0 0 0 1
Genome Diagnostics Laboratory, University Medical Center Utrecht 0 2 0 0 1 0 0 1
Genomic Research Center, Shahid Beheshti University of Medical Sciences 0 2 0 1 0 0 0 1
Hadassah Hebrew University Medical Center 0 1 0 1 0 0 0 1
ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology 0 0 0 1 0 0 0 1
Institute of Human Genetics Greifswald, Research Division, University Medicine Greifswald 0 0 0 1 0 0 0 1
Institute of Human Genetics, Clinical Exome/Genome Diagnostics Group, University Hospital Bonn 0 0 0 1 0 0 0 1
Institute of Human Genetics, University of Leipzig Medical Center 0 20 0 1 0 0 0 1
Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen 0 5 0 1 0 0 0 1
Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein 0 3 0 1 0 0 0 1
Laboratory of Molecular Genetics, National Medical Research Center for Therapy and Preventive Medicine 0 0 0 0 0 0 1 1
Laboratory of molecular diagnosis of dyslipidemias, Università egli studi di Napoli Federico II 0 0 0 1 0 0 0 1
Lifecell International Pvt. Ltd 0 2 0 1 0 0 0 1
Molecular Biology Laboratory, Fundació Puigvert 0 0 0 1 0 0 0 1
Molecular Diagnostics Lab, Nemours Children's Health, Delaware 0 0 0 1 0 0 0 1
Molecular Genetics Laboratory, BC Children's and BC Women's Hospitals 0 2 0 1 0 0 0 1
New York Genome Center 0 5 0 1 0 0 0 1
North West Genomic Laboratory Hub, Manchester University NHS Foundation Trust 0 0 0 1 0 0 0 1
PDHA1 Study Group, University Children’s Hospital, Paracelsus Medical University 0 0 0 1 0 0 0 1
Rady Children's Institute for Genomic Medicine, Rady Children's Hospital San Diego 0 3 0 1 0 0 0 1
St. Jude Molecular Pathology, St. Jude Children's Research Hospital 0 1 0 1 0 0 0 1
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute 0 13 0 1 0 0 0 1

All variants with conflicting interpretations #

Total variants: 63
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_000372.5(TYR):c.1205G>A (p.Arg402Gln) rs1126809 0.17677
NM_005105.5(RBM8A):c.-21G>A rs139428292 0.01871
NM_025216.3(WNT10A):c.682T>A (p.Phe228Ile) rs121908120 0.01412
NM_000083.3(CLCN1):c.2680C>T (p.Arg894Ter) rs55960271 0.00561
NM_006715.4(MAN2C1):c.2303G>A (p.Arg768Gln) rs62029711 0.00344
NM_000341.4(SLC3A1):c.1400T>C (p.Met467Thr) rs121912691 0.00175
NM_000243.3(MEFV):c.2177T>C (p.Val726Ala) rs28940579 0.00147
NM_003119.4(SPG7):c.1045G>A (p.Gly349Ser) rs141659620 0.00102
NM_003754.3(EIF3F):c.694T>G (p.Phe232Val) rs141976414 0.00080
NM_152564.5(VPS13B):c.5606C>T (p.Thr1869Met) rs117148013 0.00078
NM_152564.5(VPS13B):c.6416A>G (p.Asn2139Ser) rs142248228 0.00070
NM_002386.4(MC1R):c.247T>C (p.Ser83Pro) rs34474212 0.00069
NM_005861.4(STUB1):c.433A>C (p.Lys145Gln) rs146251364 0.00063
NM_001384732.1(CPLANE1):c.8462-1G>C rs151279194 0.00060
NM_016042.4(EXOSC3):c.395A>C (p.Asp132Ala) rs141138948 0.00048
NM_000368.5(TSC1):c.2285A>G (p.Asn762Ser) rs118203670 0.00042
NM_005732.4(RAD50):c.2397G>C (p.Gln799His) rs61749630 0.00034
NM_000137.4(FAH):c.1062+5G>A rs80338901 0.00027
NM_001378969.1(KCND3):c.641A>G (p.Lys214Arg) rs142744204 0.00024
NM_002693.3(POLG):c.3139C>T (p.Arg1047Trp) rs181860632 0.00010
NM_000398.7(CYB5R3):c.757G>A (p.Val253Met) rs144071404 0.00006
NM_002739.5(PRKCG):c.1730C>T (p.Ser577Leu) rs551805527 0.00005
NM_003119.4(SPG7):c.2228T>C (p.Ile743Thr) rs752623413 0.00005
NM_000527.5(LDLR):c.798T>A (p.Asp266Glu) rs139043155 0.00004
NM_003119.4(SPG7):c.861+2dup rs771256761 0.00004
NM_024675.4(PALB2):c.194C>T (p.Pro65Leu) rs62625272 0.00004
NM_000527.5(LDLR):c.662A>G (p.Asp221Gly) rs373822756 0.00003
NM_017780.4(CHD7):c.500C>T (p.Pro167Leu) rs61742851 0.00003
NM_000051.4(ATM):c.3576G>A (p.Lys1192=) rs587776551 0.00001
NM_000284.4(PDHA1):c.379C>T (p.Arg127Trp) rs199959402 0.00001
NM_000527.5(LDLR):c.1285G>A (p.Val429Met) rs28942078 0.00001
NM_000527.5(LDLR):c.1359-1G>A rs139617694 0.00001
NM_000527.5(LDLR):c.313+2T>C rs793888517 0.00001
NM_001003800.2(BICD2):c.2108C>T (p.Thr703Met) rs371707778 0.00001
NM_014946.4(SPAST):c.1685G>A (p.Arg562Gln) rs863224923 0.00001
NM_015107.3(PHF8):c.1731-2A>G rs1437750762 0.00001
NM_138422.4(ADAT3):c.430G>A (p.Val144Met) rs730882213 0.00001
NM_198578.4(LRRK2):c.4322G>A (p.Arg1441His) rs34995376 0.00001
NM_000038.6(APC):c.4786del (p.Gln1596fs) rs2533599640
NM_000051.4(ATM):c.7875_7876delinsGC (p.Asp2625_Ala2626delinsGluPro) rs267606668
NM_000059.4(BRCA2):c.4284dup (p.Gln1429fs) rs80359439
NM_000083.3(CLCN1):c.1437_1450del (p.Pro480fs) rs768119034
NM_000161.3(GCH1):c.689T>C (p.Met230Thr) rs2140038798
NM_000311.5(PRNP):c.532G>A (p.Asp178Asn) rs74315403
NM_000492.3(CFTR):c.1521_1523del (p.Phe508del) rs113993960
NM_001007527.2(LMBRD2):c.1448G>A (p.Arg483His) rs2111857835
NM_001172509.2(SATB2):c.426G>A (p.Met142Ile) rs764205432
NM_001258392.3(CLPB):c.1795C>A (p.Arg599Ser) rs369227883
NM_001323289.2(CDKL5):c.1675C>T (p.Arg559Ter) rs267608395
NM_001356.5(DDX3X):c.874C>T (p.Arg292Ter) rs1555953488
NM_001360.3(DHCR7):c.385_412+5del rs746482788
NM_001374828.1(ARID1B):c.3061C>T (p.Gln1021Ter) rs1554226145
NM_001540.5(HSPB1):c.415A>G (p.Thr139Ala) rs1554614648
NM_001605.3(AARS1):c.986G>A (p.Arg329His) rs267606621
NM_002485.5(NBN):c.2238C>A (p.Tyr746Ter) rs751570713
NM_005591.4(MRE11):c.1222dup (p.Thr408fs) rs774440500
NM_006618.5(KDM5B):c.712-4del rs558975598
NM_006757.4(TNNT3):c.188G>A (p.Arg63His) rs121434638
NM_006852.6(TLK2):c.890G>A (p.Gly297Asp) rs1555639254
NM_007144.3(PCGF2):c.194C>T (p.Pro65Leu) rs1567941252
NM_145239.3(PRRT2):c.649dup (p.Arg217fs) rs587778771
NM_198880.3(QRICH1):c.2207G>A (p.Ser736Asn) rs2093229974
NM_207111.4(RNF216):c.1616A>G (p.Tyr539Cys) rs148642312

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