ClinVar Miner

Variants from Claritas Genomics with conflicting interpretations

Location: United States  Primary collection method: clinical testing
Minimum review status of the submission from Claritas Genomics: Collection method of the submission from Claritas Genomics:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
69 22 0 28 11 0 2 39

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
Claritas Genomics pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 6 0 0 0
likely pathogenic 2 0 0 0 0
uncertain significance 0 2 0 8 5
likely benign 0 0 1 0 4
benign 0 0 0 16 0

Submitter to submitter summary #

Total submitters: 30
Download table as spreadsheet
Submitter Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
Genetic Services Laboratory, University of Chicago 0 7 0 15 0 0 0 15
Women's Health and Genetics/Laboratory Corporation of America, LabCorp 0 13 0 7 2 0 0 9
GeneDx 0 30 0 3 4 0 0 7
CeGaT Center for Human Genetics Tuebingen 0 4 0 0 6 0 0 6
Breakthrough Genomics, Breakthrough Genomics 0 22 0 5 0 0 0 5
Labcorp Genetics (formerly Invitae), Labcorp 0 23 0 1 4 0 0 5
Athena Diagnostics 0 3 0 2 2 0 0 4
Mayo Clinic Laboratories, Mayo Clinic 0 18 0 3 1 0 0 4
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories 0 6 0 3 0 0 0 3
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center 0 16 0 3 0 0 0 3
Eurofins Ntd Llc (ga) 0 18 0 2 1 0 0 3
Molecular Diagnostic Laboratory for Inherited Cardiovascular Disease, Montreal Heart Institute 0 6 0 3 0 0 0 3
PreventionGenetics, part of Exact Sciences 0 22 0 2 1 0 0 3
Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics 0 1 0 1 1 0 0 2
Genome Diagnostics Laboratory, Amsterdam University Medical Center 0 7 0 2 0 0 0 2
Genomics England Pilot Project, Genomics England 0 0 0 2 0 0 0 2
NIHR Bioresource Rare Diseases, University of Cambridge 0 0 0 0 0 0 2 2
Baylor Genetics 0 6 0 1 0 0 0 1
Beijing Key Laboratry for Genetics of Birth Defects, Beijing Children's Hospital 0 0 0 1 0 0 0 1
Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard 0 0 0 1 0 0 0 1
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen 0 7 0 1 0 0 0 1
Genetics and Molecular Pathology, SA Pathology 0 0 0 1 0 0 0 1
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin 0 0 0 1 0 0 0 1
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ 0 10 0 1 0 0 0 1
Juno Genomics, Hangzhou Juno Genomics, Inc 0 0 0 1 0 0 0 1
Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) 0 3 0 1 0 0 0 1
Laboratory of Genetics, Children's Clinical University Hospital Latvia 0 0 0 0 1 0 0 1
Mendelics 0 0 0 0 1 0 0 1
OMIM 0 8 0 1 0 0 0 1
Rady Children's Institute for Genomic Medicine, Rady Children's Hospital San Diego 0 0 0 1 0 0 0 1

All variants with conflicting interpretations #

Total variants: 39
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_004628.5(XPC):c.2815C>A (p.Gln939Lys) rs2228001 0.64910
NM_000124.4(ERCC6):c.135C>G (p.Leu45=) rs2228524 0.63279
NM_000124.4(ERCC6):c.2751C>T (p.Gly917=) rs2229760 0.31596
NM_001110556.2(FLNA):c.5850T>C (p.Ala1950=) rs2070825 0.22980
NM_000124.4(ERCC6):c.3637A>G (p.Arg1213Gly) rs2228527 0.19565
NM_000124.4(ERCC6):c.3289A>G (p.Met1097Val) rs2228526 0.19557
NM_000124.4(ERCC6):c.4238A>G (p.Gln1413Arg) rs2228529 0.19381
NM_000124.4(ERCC6):c.1196G>A (p.Gly399Asp) rs2228528 0.17892
NM_000124.4(ERCC6):c.411G>A (p.Leu137=) rs4253013 0.10284
NM_001110556.2(FLNA):c.4920G>A (p.Gly1640=) rs61741041 0.07590
NM_001110556.2(FLNA):c.3035C>T (p.Ser1012Leu) rs17091204 0.04081
NM_001110556.2(FLNA):c.5290G>A (p.Ala1764Thr) rs57108893 0.04049
NM_001110556.2(FLNA):c.1286C>T (p.Thr429Met) rs36051194 0.01426
NM_000124.4(ERCC6):c.3177T>C (p.Ser1059=) rs4253207 0.01168
NM_001110556.2(FLNA):c.3690C>T (p.Thr1230=) rs35015603 0.00732
NM_001110556.2(FLNA):c.6742C>T (p.Leu2248=) rs113510895 0.00698
NM_001110556.2(FLNA):c.663C>T (p.Pro221=) rs2073470 0.00452
NM_001110556.2(FLNA):c.1176G>A (p.Glu392=) rs201173693 0.00446
NM_020361.5(CPA6):c.799G>A (p.Gly267Arg) rs61738009 0.00239
NM_000124.4(ERCC6):c.1996C>T (p.Arg666Cys) rs61760163 0.00179
NM_000124.4(ERCC6):c.3122A>C (p.Gln1041Pro) rs139007661 0.00179
NM_020361.5(CPA6):c.619C>G (p.Gln207Glu) rs35993949 0.00121
NM_001110556.2(FLNA):c.4451A>G (p.Gln1484Arg) rs200130356 0.00086
NM_000124.4(ERCC6):c.150G>A (p.Val50=) rs80133923 0.00073
NM_001110556.2(FLNA):c.4866C>T (p.Tyr1622=) rs200835571 0.00072
NM_003850.3(SUCLA2):c.236C>T (p.Ser79Leu) rs142289138 0.00062
NM_006031.6(PCNT):c.644G>A (p.Cys215Tyr) rs138962786 0.00039
NM_000124.4(ERCC6):c.670C>T (p.Leu224Phe) rs150935953 0.00024
NM_000124.4(ERCC6):c.2167C>T (p.Gln723Ter) rs151242354 0.00009
NM_000124.4(ERCC6):c.2599-26A>G rs4253196 0.00006
NM_000124.4(ERCC6):c.2203C>T (p.Arg735Ter) rs121917901 0.00005
NM_006772.3(SYNGAP1):c.1285C>T (p.Arg429Trp) rs748333558 0.00002
NM_000124.4(ERCC6):c.2096dup (p.Leu700fs) rs774791374 0.00001
NM_000152.5(GAA):c.1082C>T (p.Pro361Leu) rs755253527 0.00001
NM_001110556.2(FLNA):c.3557C>T (p.Ser1186Leu) rs137853312 0.00001
NM_000124.4(ERCC6):c.1518del (p.Lys506fs) rs786205168
NM_000124.4(ERCC6):c.3284C>G (p.Pro1095Arg) rs4253208
NM_000124.4(ERCC6):c.3689G>C (p.Arg1230Pro) rs4253211
NM_001110556.2(FLNA):c.3596C>T (p.Ser1199Leu) rs28935473

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