ClinVar Miner

Variants in gene KIF1A with conflicting interpretations

See also:
Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic) 		Variants with a confidence conflict
(e.g. benign vs likely benign) 		Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects) 		Variants with a clinically significant conflict
(e.g. benign vs pathogenic) 		Variants with any conflict
2996 238 0 80 51 0 6 123

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 27 2 0 0
likely pathogenic 27 0 4 0 0
uncertain significance 2 4 0 44 20
likely benign 0 0 44 0 53
benign 0 0 19 53 0

All variants with conflicting interpretations #

Total variants: 123
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_001244008.2(KIF1A):c.991T>C (p.Leu331=) rs1063353 0.45235
NM_001244008.2(KIF1A):c.3641-8C>T rs56024577 0.23553
NM_001244008.2(KIF1A):c.4319-8C>T rs1529663 0.04602
NM_001244008.2(KIF1A):c.234C>T (p.Gly78=) rs61744930 0.03600
NM_001244008.2(KIF1A):c.2235C>T (p.Ala745=) rs35945835 0.03379
NM_001244008.2(KIF1A):c.4143G>A (p.Pro1381=) rs2241683 0.02108
NM_001244008.2(KIF1A):c.393C>T (p.Asn131=) rs35139906 0.01840
NM_001244008.2(KIF1A):c.1503A>G (p.Pro501=) rs35663732 0.01790
NM_001244008.2(KIF1A):c.3282C>T (p.His1094=) rs35664935 0.01680
NM_001244008.2(KIF1A):c.2979C>T (p.Ala993=) rs116297894 0.01425
NM_001244008.2(KIF1A):c.363+16C>T rs7594569 0.01003
NM_001244008.2(KIF1A):c.2385C>T (p.Ala795=) rs62637652 0.00979
NM_001244008.2(KIF1A):c.184-10C>T rs7594776 0.00820
NM_001244008.2(KIF1A):c.3063+17C>T rs116040950 0.00819
NM_001244008.2(KIF1A):c.4812C>A (p.Thr1604=) rs76974316 0.00819
NM_001244008.2(KIF1A):c.1208-73G>A rs76061558 0.00816
NM_001244008.2(KIF1A):c.5021+16C>T rs138847355 0.00783
NM_001244008.2(KIF1A):c.4318+17C>T rs138964333 0.00691
NM_001244008.2(KIF1A):c.4604C>T (p.Ala1535Val) rs141441058 0.00470
NM_001244008.2(KIF1A):c.3259C>T (p.Pro1087Ser) rs143037290 0.00369
NM_001244008.2(KIF1A):c.3202+10C>A rs190997558 0.00326
NM_001244008.2(KIF1A):c.183+7C>T rs74469870 0.00324
NM_001244008.2(KIF1A):c.4917G>A (p.Leu1639=) rs187810230 0.00225
NM_001244008.2(KIF1A):c.4889G>A (p.Arg1630Gln) rs191428830 0.00224
NM_001244008.2(KIF1A):c.3345C>G (p.Ala1115=) rs370286749 0.00214
NM_001244008.2(KIF1A):c.2898C>G (p.Pro966=) rs140783695 0.00209
NM_001244008.2(KIF1A):c.5043G>A (p.Gly1681=) rs143815273 0.00194
NM_001244008.2(KIF1A):c.2958G>C (p.Val986=) rs186881889 0.00175
NM_001244008.2(KIF1A):c.3085G>A (p.Val1029Met) rs183359489 0.00160
NM_001244008.2(KIF1A):c.2445-8C>T rs200705912 0.00131
NM_001244008.2(KIF1A):c.3246C>T (p.Ala1082=) rs368682964 0.00105
NM_001244008.2(KIF1A):c.4875G>A (p.Pro1625=) rs201418175 0.00100
NM_001244008.2(KIF1A):c.2475C>T (p.Tyr825=) rs199996308 0.00072
NM_001244008.2(KIF1A):c.1208-40G>A rs375833834 0.00066
NM_001244008.2(KIF1A):c.849C>T (p.Ser283=) rs187442951 0.00060
NM_001244008.2(KIF1A):c.4749C>T (p.Ser1583=) rs371737085 0.00058
NM_001244008.2(KIF1A):c.3494T>C (p.Ile1165Thr) rs35698242 0.00057
NM_001244008.2(KIF1A):c.618G>A (p.Ala206=) rs137913879 0.00056
NM_001244008.2(KIF1A):c.3330G>A (p.Ala1110=) rs200149062 0.00045
NM_001244008.2(KIF1A):c.2813G>A (p.Arg938Gln) rs192102667 0.00038
NM_001244008.2(KIF1A):c.4778C>T (p.Pro1593Leu) rs200902828 0.00037
NM_001244008.2(KIF1A):c.405C>T (p.Asn135=) rs151212200 0.00036
NM_001244008.2(KIF1A):c.2079G>A (p.Pro693=) rs201961762 0.00032
NM_001244008.2(KIF1A):c.3468C>T (p.Ile1156=) rs201981364 0.00032
NM_001244008.2(KIF1A):c.4927G>A (p.Asp1643Asn) rs200141437 0.00031
NM_001244008.2(KIF1A):c.5168C>T (p.Ala1723Val) rs199804623 0.00026
NM_001244008.2(KIF1A):c.4744-5C>T rs117815481 0.00024
NM_001244008.2(KIF1A):c.3668C>T (p.Thr1223Met) rs374873057 0.00021
NM_001244008.2(KIF1A):c.5155G>A (p.Val1719Met) rs200511467 0.00019
NM_001244008.2(KIF1A):c.3202+8G>A rs371620074 0.00018
NM_001244008.2(KIF1A):c.4554C>T (p.Ser1518=) rs775395101 0.00018
NM_001244008.2(KIF1A):c.882+8G>A rs376552408 0.00018
NM_001244008.2(KIF1A):c.3247G>A (p.Ala1083Thr) rs201793635 0.00016
NM_001244008.2(KIF1A):c.4249T>A (p.Ser1417Thr) rs200855792 0.00016
NM_001244008.2(KIF1A):c.4771C>T (p.Arg1591Trp) rs201139273 0.00015
NM_001244008.2(KIF1A):c.3160G>A (p.Val1054Met) rs371233697 0.00011
NM_001244008.2(KIF1A):c.774G>A (p.Thr258=) rs774916700 0.00011
NM_001244008.2(KIF1A):c.4374C>T (p.Gly1458=) rs375309925 0.00009
NM_001244008.2(KIF1A):c.4498G>C (p.Glu1500Gln) rs376432305 0.00009
NM_001244008.2(KIF1A):c.5070G>A (p.Thr1690=) rs201733233 0.00008
NM_001244008.2(KIF1A):c.4638C>T (p.Asn1546=) rs771217469 0.00007
NM_001244008.2(KIF1A):c.2088C>T (p.Asn696=) rs758111969 0.00006
NM_001244008.2(KIF1A):c.3584+6C>T rs371009856 0.00006
NM_001244008.2(KIF1A):c.4955G>A (p.Arg1652Gln) rs376658420 0.00006
NM_001244008.2(KIF1A):c.1949+7C>T rs555750413 0.00005
NM_001244008.2(KIF1A):c.3928G>A (p.Asp1310Asn) rs371252476 0.00005
NM_001244008.2(KIF1A):c.883-3C>T rs111507743 0.00005
NM_001244008.2(KIF1A):c.223C>T (p.Arg75Trp) rs778224699 0.00004
NM_001244008.2(KIF1A):c.3254A>G (p.Asp1085Gly) rs550429072 0.00004
NM_001244008.2(KIF1A):c.4666-5C>T rs532806732 0.00004
NM_001244008.2(KIF1A):c.1862C>T (p.Thr621Met) rs760338913 0.00003
NM_001244008.2(KIF1A):c.3703G>A (p.Asp1235Asn) rs200257048 0.00003
NM_001244008.2(KIF1A):c.4584C>T (p.Ser1528=) rs747267404 0.00003
NM_001244008.2(KIF1A):c.4007+7C>T rs555842583 0.00002
NM_001244008.2(KIF1A):c.2840del (p.Leu947fs) rs587778791 0.00001
NM_001244008.2(KIF1A):c.3288C>T (p.Arg1096=) rs542427011 0.00001
NM_001244008.2(KIF1A):c.3465+4C>T rs879064869 0.00001
NM_001244008.2(KIF1A):c.3905G>A (p.Arg1302His) rs376697478 0.00001
NM_001244008.2(KIF1A):c.4971C>A (p.Asp1657Glu) rs184939069 0.00001
NM_001244008.2(KIF1A):c.1013A>G (p.Tyr338Cys) rs2125976707
NM_001244008.2(KIF1A):c.1040A>G (p.Tyr347Cys) rs879254004
NM_001244008.2(KIF1A):c.1217C>A (p.Ala406Asp)
NM_001244008.2(KIF1A):c.173C>T (p.Ser58Leu) rs672601362
NM_001244008.2(KIF1A):c.1894C>T (p.Gln632Ter) rs2050749062
NM_001244008.2(KIF1A):c.204G>T (p.Ala68=) rs141052770
NM_001244008.2(KIF1A):c.206C>T (p.Ser69Leu) rs786200949
NM_001244008.2(KIF1A):c.232G>A (p.Gly78Ser) rs1057518760
NM_001244008.2(KIF1A):c.2493G>T (p.Val831=) rs201861261
NM_001244008.2(KIF1A):c.2694C>G (p.Thr898=) rs555856342
NM_001244008.2(KIF1A):c.2721GGA[12] (p.Glu917dup) rs10594016
NM_001244008.2(KIF1A):c.2721GGA[9] (p.Glu916_Glu917del) rs10594016
NM_001244008.2(KIF1A):c.304G>A (p.Gly102Ser) rs1064795534
NM_001244008.2(KIF1A):c.3072C>G (p.Ser1024=) rs73102625
NM_001244008.2(KIF1A):c.3072C>T (p.Ser1024=) rs73102625
NM_001244008.2(KIF1A):c.3132C>A (p.Ile1044=) rs373045276
NM_001244008.2(KIF1A):c.32G>A (p.Arg11Gln) rs1575654528
NM_001244008.2(KIF1A):c.3391G>A (p.Asp1131Asn) rs2537277627
NM_001244008.2(KIF1A):c.363+9C>G rs368803931
NM_001244008.2(KIF1A):c.37C>T (p.Arg13Cys) rs1064794935
NM_001244008.2(KIF1A):c.38G>A (p.Arg13His) rs797045050
NM_001244008.2(KIF1A):c.4278C>G (p.Tyr1426Ter) rs572662012
NM_001244008.2(KIF1A):c.500G>A (p.Arg167His) rs2054757914
NM_001244008.2(KIF1A):c.506G>A (p.Arg169Lys) rs876661168
NM_001244008.2(KIF1A):c.595G>A (p.Gly199Arg) rs1553638614
NM_001244008.2(KIF1A):c.604G>C (p.Ala202Pro) rs672601366
NM_001244008.2(KIF1A):c.643A>C (p.Ser215Arg) rs672601367
NM_001244008.2(KIF1A):c.646C>T (p.Arg216Cys) rs797045164
NM_001244008.2(KIF1A):c.647G>A (p.Arg216His) rs672601368
NM_001244008.2(KIF1A):c.647G>C (p.Arg216Pro) rs672601368
NM_001244008.2(KIF1A):c.720+5G>C rs377502239
NM_001244008.2(KIF1A):c.739G>A (p.Val247Met) rs2538278006
NM_001244008.2(KIF1A):c.760C>T (p.Arg254Trp) rs879253888
NM_001244008.2(KIF1A):c.761G>A (p.Arg254Gln) rs886041692
NM_001244008.2(KIF1A):c.773C>T (p.Thr258Met) rs1553638086
NM_001244008.2(KIF1A):c.805del (p.Ala269fs) rs2538259164
NM_001244008.2(KIF1A):c.821C>T (p.Ser274Leu) rs797045655
NM_001244008.2(KIF1A):c.865-24CT[2] rs140674901
NM_001244008.2(KIF1A):c.914C>T (p.Pro305Leu) rs1131690804
NM_001244008.2(KIF1A):c.920G>A (p.Arg307Gln) rs1064793161
NM_001244008.2(KIF1A):c.920G>C (p.Arg307Pro) rs1064793161
NM_001244008.2(KIF1A):c.946C>T (p.Arg316Trp) rs672601370
NM_001244008.2(KIF1A):c.947G>A (p.Arg316Gln) rs749718096
Single allele

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