ClinVar Miner

Variants with conflicting interpretations studied for Epidermolysis bullosa simplex 5B, with muscular dystrophy; Epidermolysis bullosa simplex, Ogna type; Epidermolysis bullosa simplex 5C, with pyloric atresia; Autosomal recessive limb-girdle muscular dystrophy type 2Q; Epidermolysis bullosa simplex with nail dystrophy

Coded as:
Minimum review status of the submission for Epidermolysis bullosa simplex 5B, with muscular dystrophy; Epidermolysis bullosa simplex, Ogna type; Epidermolysis bullosa simplex 5C, with pyloric atresia; Autosomal recessive limb-girdle muscular dystrophy type 2Q; Epidermolysis bullosa simplex with nail dystrophy: Collection method of the submission for Epidermolysis bullosa simplex 5B, with muscular dystrophy; Epidermolysis bullosa simplex, Ogna type; Epidermolysis bullosa simplex 5C, with pyloric atresia; Autosomal recessive limb-girdle muscular dystrophy type 2Q; Epidermolysis bullosa simplex with nail dystrophy:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
4733 905 0 16 61 0 0 77

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All conditions
Epidermolysis bullosa simplex 5B, with muscular dystrophy; Epidermolysis bullosa simplex, Ogna type; Epidermolysis bullosa simplex 5C, with pyloric atresia; Autosomal recessive limb-girdle muscular dystrophy type 2Q; Epidermolysis bullosa simplex with nail dystrophy uncertain significance likely benign
uncertain significance 0 19
likely benign 36 0
benign 6 16

Condition to condition summary #

Total conditions: 2
Download table as spreadsheet
Condition Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
Inborn genetic diseases 0 865 0 3 58 0 0 61
Epidermolysis bullosa simplex 5B, with muscular dystrophy; Junctional epidermolysis bullosa with pyloric atresia; Epidermolysis bullosa simplex, Ogna type; Epidermolysis bullosa simplex 5C, with pyloric atresia; Autosomal recessive limb-girdle muscular dystrophy type 2Q; Epidermolysis bullosa simplex with nail dystrophy 0 50 0 13 5 0 0 18

All variants with conflicting interpretations #

Total variants: 77
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HGVS dbSNP gnomAD frequency
NM_201384.3(PLEC):c.8012G>A (p.Arg2671Gln) rs28526657 0.01433
NM_201384.3(PLEC):c.4557G>A (p.Ser1519=) rs79705634 0.01389
NM_201384.3(PLEC):c.6577C>T (p.Leu2193=) rs28610521 0.01285
NM_201384.3(PLEC):c.5477G>A (p.Arg1826Gln) rs147838690 0.01046
NM_201384.3(PLEC):c.8489A>G (p.Tyr2830Cys) rs199720608 0.00920
NM_201384.3(PLEC):c.12360G>A (p.Pro4120=) rs146781600 0.00910
NM_201384.3(PLEC):c.13110C>T (p.Ala4370=) rs187810163 0.00617
NM_201384.3(PLEC):c.2961C>T (p.Ser987=) rs149932255 0.00603
NM_201384.3(PLEC):c.4044+16C>T rs182039608 0.00358
NM_201384.3(PLEC):c.7880C>G (p.Pro2627Arg) rs184879368 0.00313
NM_201384.3(PLEC):c.9718G>A (p.Glu3240Lys) rs75857070 0.00241
NM_201384.3(PLEC):c.6069C>G (p.Arg2023=) rs376365984 0.00206
NM_201384.3(PLEC):c.9351C>T (p.Phe3117=) rs200895343 0.00153
NM_201384.3(PLEC):c.8625C>T (p.Pro2875=) rs183401234 0.00141
NM_201384.3(PLEC):c.8660A>G (p.Lys2887Arg) rs201655861 0.00141
NM_201384.3(PLEC):c.8201C>T (p.Ala2734Val) rs200202579 0.00118
NM_201384.3(PLEC):c.1969A>T (p.Ser657Cys) rs199843296 0.00097
NM_201384.3(PLEC):c.11611G>A (p.Gly3871Ser) rs201419047 0.00096
NM_201384.3(PLEC):c.3731T>G (p.Val1244Gly) rs187648086 0.00089
NM_201384.3(PLEC):c.3620G>T (p.Arg1207Leu) rs146685404 0.00082
NM_201384.3(PLEC):c.6311C>T (p.Ala2104Val) rs201959200 0.00081
NM_201384.3(PLEC):c.5471C>T (p.Ala1824Val) rs542642242 0.00078
NM_201384.3(PLEC):c.2263G>A (p.Ala755Thr) rs200173947 0.00074
NM_201384.3(PLEC):c.1158C>G (p.Ser386Arg) rs201667254 0.00072
NM_201384.3(PLEC):c.5024G>A (p.Arg1675Gln) rs370569372 0.00064
NM_201384.3(PLEC):c.7613A>G (p.Gln2538Arg) rs372005251 0.00053
NM_201384.3(PLEC):c.6300G>A (p.Ala2100=) rs188154081 0.00045
NM_201384.3(PLEC):c.6266C>T (p.Ala2089Val) rs782278608 0.00036
NM_201384.3(PLEC):c.10105G>T (p.Val3369Leu) rs201373953 0.00032
NM_201384.3(PLEC):c.9475G>A (p.Ala3159Thr) rs201030020 0.00026
NM_201384.3(PLEC):c.12475C>T (p.Arg4159Cys) rs201069314 0.00024
NM_201384.3(PLEC):c.2978G>A (p.Arg993Gln) rs534045685 0.00024
NM_201384.3(PLEC):c.2140A>G (p.Ile714Val) rs189137260 0.00021
NM_201384.3(PLEC):c.4101C>T (p.Ala1367=) rs376065732 0.00021
NM_201384.3(PLEC):c.885G>A (p.Met295Ile) rs201041690 0.00021
NM_201384.3(PLEC):c.3286C>T (p.Arg1096Cys) rs533410461 0.00017
NM_201384.3(PLEC):c.801C>T (p.Asp267=) rs202218097 0.00017
NM_201384.3(PLEC):c.5029G>A (p.Gly1677Ser) rs373952777 0.00016
NM_201384.3(PLEC):c.5582C>T (p.Ala1861Val) rs200949161 0.00016
NM_201384.3(PLEC):c.9692G>A (p.Arg3231His) rs377610697 0.00016
NM_201384.3(PLEC):c.3227A>G (p.Gln1076Arg) rs576369528 0.00015
NM_201384.3(PLEC):c.8981G>A (p.Arg2994His) rs200970115 0.00015
NM_201384.3(PLEC):c.11476C>T (p.Arg3826Cys) rs781836500 0.00014
NM_201384.3(PLEC):c.3368C>T (p.Pro1123Leu) rs376494828 0.00012
NM_201384.3(PLEC):c.9593G>A (p.Arg3198Gln) rs559417477 0.00012
NM_201384.3(PLEC):c.11077G>A (p.Ala3693Thr) rs369497741 0.00011
NM_201384.3(PLEC):c.13450G>A (p.Gly4484Ser) rs782650176 0.00011
NM_201384.3(PLEC):c.5948G>A (p.Arg1983His) rs527947459 0.00011
NM_201384.3(PLEC):c.6038G>A (p.Arg2013Gln) rs369708974 0.00011
NM_201384.3(PLEC):c.12985C>T (p.Arg4329Cys) rs375593618 0.00009
NM_201384.3(PLEC):c.13097C>T (p.Thr4366Ile) rs200807583 0.00009
NM_201384.3(PLEC):c.8531C>T (p.Ala2844Val) rs550856659 0.00009
NM_201384.3(PLEC):c.8492G>A (p.Arg2831Gln) rs377604549 0.00007
NM_201384.3(PLEC):c.5942G>A (p.Arg1981Gln) rs782635621 0.00006
NM_201384.3(PLEC):c.10207C>T (p.Arg3403Trp) rs542488020 0.00005
NM_201384.3(PLEC):c.12352C>T (p.Leu4118Phe) rs571797590 0.00005
NM_201384.3(PLEC):c.4247G>A (p.Arg1416His) rs565291398 0.00005
NM_201384.3(PLEC):c.4727C>T (p.Ala1576Val) rs782322130 0.00005
NM_201384.3(PLEC):c.7742G>A (p.Arg2581Gln) rs560763455 0.00005
NM_201384.3(PLEC):c.8524G>A (p.Val2842Ile) rs782665391 0.00005
NM_201384.3(PLEC):c.9023G>A (p.Arg3008Gln) rs200176579 0.00005
NM_201384.3(PLEC):c.11509C>G (p.Leu3837Val) rs782299926 0.00004
NM_201384.3(PLEC):c.13574C>T (p.Ser4525Leu) rs368507062 0.00004
NM_201384.3(PLEC):c.8111A>C (p.Lys2704Thr) rs376577874 0.00004
NM_201384.3(PLEC):c.4313G>A (p.Arg1438Gln) rs782642707 0.00003
NM_201384.3(PLEC):c.9317G>A (p.Arg3106Lys) rs374190410 0.00003
NM_201384.3(PLEC):c.12721G>A (p.Gly4241Ser) rs782789434 0.00002
NM_201384.3(PLEC):c.7952G>A (p.Arg2651Gln) rs375411469 0.00002
NM_201384.3(PLEC):c.8140G>A (p.Ala2714Thr) rs782744244 0.00002
NM_201384.3(PLEC):c.11765C>G (p.Thr3922Ser) rs782210275 0.00001
NM_201384.3(PLEC):c.5527G>A (p.Gly1843Ser) rs781804005 0.00001
NM_201384.3(PLEC):c.8384G>A (p.Gly2795Asp) rs782632583 0.00001
NM_201384.3(PLEC):c.8455G>A (p.Val2819Met) rs782271365 0.00001
NM_201384.3(PLEC):c.9043A>G (p.Thr3015Ala) rs782319376 0.00001
NM_201384.3(PLEC):c.9538G>A (p.Ala3180Thr) rs782281123 0.00001
NM_201384.3(PLEC):c.11573C>T (p.Thr3858Met) rs373863249
NM_201384.3(PLEC):c.8506G>A (p.Asp2836Asn) rs200814155

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