Variants from Department of Clinical Pathology, School of Medicine, Fujita Health University

Minimum submission review status:		Collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
Show significances as they were submitted (without aggregation into standard terms)

If a variant has more than one submission, it may be counted in more than one significance column. If this is the case, the total number of variants will be less than the sum of the other cells.

pathogenic	likely pathogenic	uncertain significance	likely benign	benign	total
39	0	0	532	0	571

Gene and significance breakdown #

Total genes and gene combinations: 512

Download table as spreadsheet

Gene or gene combination	pathogenic	likely benign	total
TET2	19	0	19
DNMT3A	7	0	7
DDX3X	4	0	4
PABPC1	0	4	4
BTG2	0	3	3
FYN	3	0	3
ABCA13	0	2	2
BIRC5	0	2	2
C2CD3	0	2	2
CCDC168	0	2	2
CHD1	0	2	2
CSMD2	0	2	2
CTBP2	0	2	2
DEFB129	0	2	2
FAT3	0	2	2
FIP1L1	0	2	2
HLA-DQA2	0	2	2
HOXA3, HOXA4	0	2	2
KMT5A	0	2	2
MOCS3	0	2	2
RPL10L	0	2	2
SCAF1	0	2	2
SHANK3	0	2	2
SLC25A14	0	2	2
SLC35G6, ZBTB4	0	2	2
ST6GAL2	0	2	2
STAT3	2	0	2
SULF1	0	2	2
TENM4	0	2	2
TMPRSS2	0	2	2
TRIO	0	2	2
AARD, LOC130000997	0	1	1
AASS	0	1	1
ABCD1, PLXNB3	0	1	1
ACAD10	0	1	1
ACTC1, GJD2-DT	0	1	1
ADAM15, ADAM15-EFNA4, DCST1	0	1	1
ADAMTSL1	0	1	1
AHNAK	0	1	1
AHNAK2	0	1	1
ALMS1	0	1	1
AMER3	0	1	1
ANK2	0	1	1
ANKHD1-EIF4EBP3, EIF4EBP3	0	1	1
ANKMY1	0	1	1
ANKRD11	0	1	1
ANKRD36C	0	1	1
AP3B2, CPEB1	0	1	1
APAF1	0	1	1
APOB	0	1	1
APOBEC2	0	1	1
AQP11	0	1	1
AQP4	0	1	1
AQP7	0	1	1
AQR	0	1	1
ARFGEF2	0	1	1
ARHGAP8, PRR5-ARHGAP8	0	1	1
ARID3A	0	1	1
ARID3C	0	1	1
ARL4D	0	1	1
ARMC3	0	1	1
ARMC9	0	1	1
ARSB	0	1	1
ASPH	0	1	1
ASPM	0	1	1
ASTN1	0	1	1
ATG7, VGLL4	0	1	1
AXIN1	0	1	1
AZIN2	0	1	1
BARHL2	0	1	1
BAZ2B	0	1	1
BEST2	0	1	1
BMP10	0	1	1
BRAT1	0	1	1
BRCA2	0	1	1
BTBD17	0	1	1
BTG1	0	1	1
BTG3, CXADR	0	1	1
BTK	0	1	1
C10orf126	0	1	1
C11orf87	0	1	1
C15orf40	0	1	1
C1QL1	0	1	1
C1S	0	1	1
C22orf23	0	1	1
C5orf58	0	1	1
C9	0	1	1
CABLES2	0	1	1
CACNA1B	0	1	1
CACNA1D	0	1	1
CACNA1I	0	1	1
CAGE1	0	1	1
CALCOCO1	0	1	1
CALCRL	0	1	1
CAMSAP3	0	1	1
CCDC140	0	1	1
CCDC27	0	1	1
CCDC8	0	1	1
CCDC93	0	1	1
CCDST, HRNR	0	1	1
CCNJ, ENTPD1	0	1	1
CD163L1	0	1	1
CD164	0	1	1
CD247	0	1	1
CDC42BPB	0	1	1
CDC42BPG	0	1	1
CDH22	0	1	1
CDIP1	0	1	1
CDK5RAP2	0	1	1
CEBPB	0	1	1
CELA1	0	1	1
CELSR1	0	1	1
CEP170B	0	1	1
CEP250	0	1	1
CHADL, L3MBTL2	0	1	1
CHRNA10	0	1	1
CHRNB4	0	1	1
CHST12	0	1	1
CIC	0	1	1
CIRSR	0	1	1
CITED1	0	1	1
CLCN4	0	1	1
CLEC14A	0	1	1
CLHC1	0	1	1
CLIP1	0	1	1
CMA1, LOC126861902	0	1	1
CNTLN	0	1	1
CNTN5	0	1	1
CNTNAP1	0	1	1
COL18A1	0	1	1
COL2A1	0	1	1
COL4A1	0	1	1
COPS6	0	1	1
COQ9	0	1	1
CPXM1	0	1	1
CPXM2	0	1	1
CR1	0	1	1
CRIPT	0	1	1
CRMP1	0	1	1
CRYZL2P-SEC16B, SEC16B	0	1	1
CTCFL	0	1	1
CTDSP2	0	1	1
CYB561D1	0	1	1
CYLC2	0	1	1
CYP26B1	0	1	1
CYP2F1	0	1	1
CYP4F22	0	1	1
CYTH4	0	1	1
DACT1	0	1	1
DBNL, PGAM2	0	1	1
DDN, PRKAG1	0	1	1
DDX17	0	1	1
DGKD	0	1	1
DIS3	0	1	1
DMBT1	0	1	1
DMD	0	1	1
DMRTA2	0	1	1
DNAH8	0	1	1
DNAJC14	0	1	1
DOCK1	0	1	1
DOCK3	0	1	1
DPYSL5	0	1	1
DSC3	0	1	1
DSCAM	0	1	1
DSG1	0	1	1
DTX1	0	1	1
EBF3	0	1	1
EFCAB5	0	1	1
EIF2AK4	0	1	1
EIF3D	0	1	1
EML1	0	1	1
EPHA7	0	1	1
EPHX1	0	1	1
EPPK1	0	1	1
ERGIC2	0	1	1
ETV6	1	0	1
EXOSC6, LOC130059324	0	1	1
EYA2	0	1	1
FAM131B	0	1	1
FAM171A1	0	1	1
FAM193A	0	1	1
FAM199X	0	1	1
FAM47B	0	1	1
FAM50B	0	1	1
FAM8A1	0	1	1
FARP1	0	1	1
FAT4	0	1	1
FBLIM1	0	1	1
FBLN1	0	1	1
FBN1	0	1	1
FBXW7	1	0	1
FCRL3	0	1	1
FGF20	0	1	1
FMN1	0	1	1
FOXD4L1	0	1	1
FRG1	0	1	1
FUT1	0	1	1
GADL1	0	1	1
GBX2	0	1	1
GIMAP1-GIMAP5, GIMAP5	0	1	1
GJC1	0	1	1
GK5	0	1	1
GLB1L3	0	1	1
GLUL	0	1	1
GLYATL3	0	1	1
GOLGA6A	0	1	1
GOLGA6L2	0	1	1
GPD1	0	1	1
GRIA2	0	1	1
GRIK2	0	1	1
GRM3	0	1	1
GTF3C3	0	1	1
HDAC4	0	1	1
HLA-A	0	1	1
HLA-B	1	0	1
HLA-C	0	1	1
HMGB1	0	1	1
HOXB1	0	1	1
HPS4	0	1	1
HSPB6	0	1	1
HSPG2	0	1	1
HYDIN	0	1	1
ICOS	0	1	1
IFNA4	0	1	1
IGDCC4	0	1	1
IGF2, INS-IGF2	0	1	1
IGFBP5	0	1	1
IGSF10	0	1	1
IL16	0	1	1
INTS1	0	1	1
INTU	0	1	1
IPO11	0	1	1
IQSEC2	0	1	1
IRF6	0	1	1
ISY1, ISY1-RAB43	0	1	1
ITGA1	0	1	1
ITGA2B	0	1	1
ITIH6	0	1	1
IVL	0	1	1
JPH2	0	1	1
KALRN	0	1	1
KCNH7	0	1	1
KCNK10	0	1	1
KCNK2	0	1	1
KCTD8	0	1	1
KIF13B	0	1	1
KIF24	0	1	1
KIF26A	0	1	1
KIT	0	1	1
KLF17	0	1	1
KLF3	0	1	1
KRT14	0	1	1
KRT16	0	1	1
KRT6C	0	1	1
KRT78	0	1	1
KRT8	0	1	1
KRTAP4-11	0	1	1
KRTAP4-9	0	1	1
LAMA1	0	1	1
LAMA2	0	1	1
LAMA5	0	1	1
LDB2	0	1	1
LDLRAD3	0	1	1
LGI2	0	1	1
LMCD1	0	1	1
LMO7DN	0	1	1
LOC105377267, UGT2B11	0	1	1
LOC112841611, NFKBIZ	0	1	1
LOC126859647, MUC21	0	1	1
LOC130058478, SOCS1	0	1	1
LOC132088707, MEGF6	0	1	1
LPAR1	0	1	1
LRBA	0	1	1
LRFN5	0	1	1
LRP1B	0	1	1
LRP5	0	1	1
LRRC37A3	0	1	1
LYST	0	1	1
MAGEB2	0	1	1
MAGI1	0	1	1
MAP1B	0	1	1
MAP4K3	0	1	1
MAPT, STH	0	1	1
MARK1	0	1	1
MBNL2	0	1	1
MCOLN1	0	1	1
MDGA2	0	1	1
ME1	0	1	1
MED14	0	1	1
MED24	0	1	1
MEGF10	0	1	1
MEP1A	0	1	1
MEX3B	0	1	1
MGAT3	0	1	1
MID1	0	1	1
MINK1	0	1	1
MIR3976HG, TMEM200C	0	1	1
MISP	0	1	1
MMP14	0	1	1
MRPL14	0	1	1
MS4A15	0	1	1
MSLN	0	1	1
MSN	0	1	1
MTCL1	0	1	1
MTMR8	0	1	1
MUC16	0	1	1
MUC4	0	1	1
MUC6	0	1	1
MYF5	0	1	1
MYH4, MYHAS	0	1	1
MYL1	0	1	1
MYL6	0	1	1
MYO16	0	1	1
MYO5B	0	1	1
MYRF	0	1	1
MZT2A, TUBA3D	0	1	1
NAV2	0	1	1
NBEAL2	0	1	1
NBPF10	0	1	1
NCAN	0	1	1
NCKAP1L	0	1	1
NDST1	0	1	1
NEK4	0	1	1
NEU3	0	1	1
NFYB	0	1	1
NHSL1	0	1	1
NLRP5	0	1	1
NMNAT1	0	1	1
NOXO1, TBL3	0	1	1
NPFFR1	0	1	1
NPY5R	0	1	1
NR2F2	0	1	1
NR6A1	0	1	1
NRAP	0	1	1
NRIP1	0	1	1
NSMF	0	1	1
OLFML2A	0	1	1
OLFML3	0	1	1
OLIG2	0	1	1
OPLAH	0	1	1
OR2M2	0	1	1
OR2M5	0	1	1
OR5D13	0	1	1
OR5M11	0	1	1
PAPPA2	0	1	1
PASD1	0	1	1
PCDHA1, PCDHA10, PCDHA11, PCDHA12, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9, PCDHA@	0	1	1
PCDHA1, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9, PCDHA@	0	1	1
PCDHA1, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA@	0	1	1
PCDHB4, PCDHB@	0	1	1
PCDHG@, PCDHGA1, PCDHGA2	0	1	1
PCDHG@, PCDHGA1, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6	0	1	1
PCDHG@, PCDHGA1, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGB1, PCDHGB2	0	1	1
PCDHG@, PCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1	0	1	1
PCLO	0	1	1
PCM1	0	1	1
PCSK7	0	1	1
PDCD11	0	1	1
PDE1A	0	1	1
PDE1C	0	1	1
PDE4A	0	1	1
PDE4D	0	1	1
PDIA4	0	1	1
PDZD8	0	1	1
PES1	0	1	1
PEX6	0	1	1
PEX7	0	1	1
PHF14	0	1	1
PIK3IP1	0	1	1
PIP4K2B	0	1	1
PKD1L1	0	1	1
PKP4	0	1	1
PLA1A	0	1	1
PLA2G4C	0	1	1
PLXNB1	0	1	1
PNPLA1	0	1	1
POLL	0	1	1
POTEF	0	1	1
PPAT	0	1	1
PPIB	0	1	1
PPP2CB	0	1	1
PRIM1	0	1	1
PRKCD	0	1	1
PRKCH, TMEM30B	0	1	1
PROM2	0	1	1
PRSS48, SH3D19	0	1	1
PSME4	0	1	1
PTPRD	0	1	1
PTPRF	0	1	1
PTPRG	0	1	1
PURG	0	1	1
PWWP2B	0	1	1
PXDN	0	1	1
PYGM	0	1	1
REPIN1	0	1	1
REV3L	0	1	1
RHBDD3	0	1	1
RHOA	1	0	1
RILPL1	0	1	1
RLBP1	0	1	1
RND2	0	1	1
RNF152	0	1	1
RNF17	0	1	1
RPS6KA2	0	1	1
RPS6KA6	0	1	1
RXFP3	0	1	1
RYR2	0	1	1
SAMD14	0	1	1
SCRIB	0	1	1
SDE2	0	1	1
SDHD	0	1	1
SEMA7A	0	1	1
SERINC2	0	1	1
SERPINA11	0	1	1
SGSM1	0	1	1
SGSM3	0	1	1
SHANK1	0	1	1
SHROOM3	0	1	1
SIGLEC1	0	1	1
SIRPB1	0	1	1
SKIDA1	0	1	1
SLC22A24	0	1	1
SLC25A39	0	1	1
SLC27A5	0	1	1
SLC37A1	0	1	1
SLC38A9	0	1	1
SLC46A3	0	1	1
SLC4A1AP	0	1	1
SLCO2B1	0	1	1
SLMAP	0	1	1
SMC5	0	1	1
SNN	0	1	1
SOS2	0	1	1
SPHK2	0	1	1
SRD5A3	0	1	1
ST8SIA2	0	1	1
SUGT1	0	1	1
SUPV3L1	0	1	1
SWAP70	0	1	1
SYNE2	0	1	1
TAP2	0	1	1
TBCEL-TECTA, TECTA	0	1	1
TBX20	0	1	1
TBXA2R	0	1	1
TCTN1	0	1	1
TDRD9	0	1	1
TDRP	0	1	1
TENM1	0	1	1
TESK1	0	1	1
TEX15	0	1	1
TGM4	0	1	1
TMC4	0	1	1
TMCC3	0	1	1
TMPRSS3	0	1	1
TNRC6B	0	1	1
TRAPPC4	0	1	1
TRDN	0	1	1
TREM1	0	1	1
TRIM9	0	1	1
TRMU	0	1	1
TSHZ1	0	1	1
TTC22	0	1	1
TTN	0	1	1
TTR	0	1	1
TVP23C, TVP23C-CDRT4	0	1	1
TYRP1	0	1	1
UBN2	0	1	1
UEVLD	0	1	1
UNC45B	0	1	1
USF3	0	1	1
USP20	0	1	1
UTS2	0	1	1
VCX3B	0	1	1
VPS13C	0	1	1
VPS37D	0	1	1
VWF	0	1	1
WDR11	0	1	1
WDR35	0	1	1
WDR87	0	1	1
XIRP2	0	1	1
XPNPEP1	0	1	1
YIF1B	0	1	1
YLPM1	0	1	1
ZC3H7A	0	1	1
ZFHX3	0	1	1
ZHX1, ZHX1-C8orf76	0	1	1
ZNF106	0	1	1
ZNF174	0	1	1
ZNF184	0	1	1
ZNF195	0	1	1
ZNF208	0	1	1
ZNF26	0	1	1
ZNF268	0	1	1
ZNF273	0	1	1
ZNF285	0	1	1
ZNF358	0	1	1
ZNF383	0	1	1
ZNF423	0	1	1
ZNF446	0	1	1
ZNF462	0	1	1
ZNF486	0	1	1
ZNF506	0	1	1
ZNF521	0	1	1
ZNF532	0	1	1
ZNF534	0	1	1
ZNF672	0	1	1
ZNF717	0	1	1
ZNF721	0	1	1
ZNF729	0	1	1
ZNF91	0	1	1
ZSWIM2	0	1	1
ZZEF1	0	1	1

Condition and significance breakdown #

Total conditions: 1

Download table as spreadsheet

Condition	pathogenic	likely benign	total
EBV-positive nodal T- and NK-cell lymphoma	39	532	571

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