ClinVar Miner

Variants studied for Epstein-Barr virus-related tumor

Included ClinVar conditions (13):
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:

If a variant has more than one submission, it may be counted in more than one significance column. If this is the case, the total number of variants will be less than the sum of the other cells.

pathogenic likely pathogenic uncertain significance likely benign benign total
27 21 94 7 3 152

Gene and significance breakdown #

Total genes and gene combinations: 38
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Gene or gene combination pathogenic likely pathogenic uncertain significance likely benign benign total
TP53 16 9 19 5 2 51
KMT2D 1 2 9 0 0 12
PIM1 0 0 11 0 0 11
LRP1B 0 0 8 0 0 8
MYC 4 0 3 0 0 7
CREBBP 0 0 6 0 0 6
NOTCH1 0 0 5 0 0 5
CARD11 0 0 4 0 0 4
LOC129996315, PIM1 0 0 4 0 0 4
CD79B, GH-LCR 0 0 3 0 0 3
IRF4 0 3 0 0 0 3
MST1R 1 0 1 1 0 3
BCL2 0 0 2 0 0 2
BCL6, LOC100131635 0 0 2 0 0 2
BRAF 0 1 1 0 0 2
KLHDC8B 1 0 1 0 0 2
MYD88 0 0 2 0 0 2
PIK3CA 1 0 1 0 0 2
PRDM1 0 0 2 0 0 2
SMARCA4 0 2 0 0 0 2
SOCS1 0 0 2 0 0 2
​intergenic 0 1 0 0 0 1
BRCA1 0 0 1 0 0 1
CHEK2 1 0 0 0 0 1
EP300 0 1 0 0 0 1
ETV6 0 0 1 0 0 1
EZH2 0 0 1 0 0 1
FGFR3 0 0 1 0 0 1
FGFR4 0 0 0 1 0 1
KMT2D, LOC126861520 0 0 1 0 0 1
KRAS 0 0 1 0 0 1
MET 0 0 1 0 0 1
NPC1 0 0 0 0 1 1
PAX5 0 0 1 0 0 1
PMS2 1 0 0 0 0 1
PTEN 0 1 0 0 0 1
TET2 0 1 0 0 0 1
TP53, WRAP53 1 0 0 0 0 1

Submitter and significance breakdown #

Total submitters: 13
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Submitter pathogenic likely pathogenic uncertain significance likely benign benign total
National Institute of Cancer Research, National Health Research Institutes 0 4 68 0 0 72
Fulgent Genetics, Fulgent Genetics 14 9 19 6 2 50
Institute for Genomic Medicine (IGM) Clinical Laboratory, Nationwide Children's Hospital 3 7 0 0 0 10
OMIM 7 0 0 0 0 7
Pathology Department, Puerta del Mar University Hospital 0 0 4 1 0 5
Department of Pathology and Laboratory Medicine, Sinai Health System 1 0 2 0 0 3
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories 0 0 0 0 1 1
Genome Sciences Centre, British Columbia Cancer Agency 1 0 0 0 0 1
Juno Genomics, Hangzhou Juno Genomics, Inc 1 0 0 0 0 1
Keimyung University Dongsan Hospital, Keimyung University School of Medicine 0 1 0 0 0 1
Pele Pequeno Principe Research Institute, Faculdades Pequeno Principe 0 0 1 0 0 1
St. Jude Molecular Pathology, St. Jude Children's Research Hospital 1 0 0 0 0 1
University Health Network, Princess Margaret Cancer Centre 1 0 0 0 0 1

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