ClinVar Miner

Submissions for variant NM_004239.4(TRIP11):c.1265T>C (p.Met422Thr)

gnomAD frequency: 0.00002  dbSNP: rs200567543
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV004678793 SCV005178353 uncertain significance Inborn genetic diseases 2024-06-17 criteria provided, single submitter clinical testing The c.1265T>C (p.M422T) alteration is located in exon 9 (coding exon 9) of the TRIP11 gene. This alteration results from a T to C substitution at nucleotide position 1265, causing the methionine (M) at amino acid position 422 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV000687865 SCV000815456 uncertain significance Achondrogenesis, type IA 2022-03-18 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Not Available"; PolyPhen-2: "Benign"; Align-GVGD: "Not Available". The threonine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. ClinVar contains an entry for this variant (Variation ID: 567703). This variant has not been reported in the literature in individuals affected with TRIP11-related conditions. This variant is present in population databases (rs200567543, gnomAD 0.002%). This sequence change replaces methionine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 422 of the TRIP11 protein (p.Met422Thr).

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