ClinVar Miner

Submissions for variant NM_000530.8(MPZ):c.245A>G (p.Tyr82Cys)

dbSNP: rs1553259707
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Kariminejad - Najmabadi Pathology & Genetics Center RCV005409710 SCV001755210 pathogenic Charcot-Marie-Tooth disease type 2I 2024-03-09 criteria provided, single submitter clinical testing Not Provided
Molecular Genetics Laboratory, London Health Sciences Centre RCV000789442 SCV001336800 pathogenic Charcot-Marie-Tooth disease criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000701835 SCV000830654 pathogenic Charcot-Marie-Tooth disease, type I 2025-06-29 criteria provided, single submitter clinical testing This sequence change replaces tyrosine, which is neutral and polar, with cysteine, which is neutral and slightly polar, at codon 82 of the MPZ protein (p.Tyr82Cys). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individual(s) with Charcot-Marie-Tooth (CMT) disease type 1 and Déjérine-Sottas syndrome (PMID: 7505151, 9633821, 11545686, 11835375, 12402337, 26310628). In at least one individual the variant was observed to be de novo. ClinVar contains an entry for this variant (Variation ID: 549681). Invitae Evidence Modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) indicates that this missense variant is expected to disrupt MPZ protein function with a positive predictive value of 80%. This variant disrupts the p.Tyr82 amino acid residue in MPZ. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 7505151, 11545686, 11835375, 12402337, 26310628). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. For these reasons, this variant has been classified as Pathogenic.
Inherited Neuropathy Consortium RCV000789442 SCV000928798 uncertain significance Charcot-Marie-Tooth disease no assertion criteria provided literature only
Institute of Human Genetics, Cologne University RCV000664225 SCV000787787 pathogenic Charcot-Marie-Tooth disease dominant intermediate D 2018-04-25 no assertion criteria provided clinical testing

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